Skip to main content

Eric: Week 1 and 2

The FitzGerald Lab is located directly across from the Children's Hospital of Pennsylvania (CHOP). The building is called the Perelman Advanced Research Center, and the reason for this title is due to the concept that there are medical doctors that meet with patients on the first four floors and the top 5-12 floors are devoted to research and many labs. The name of the institute that I am working in is known as the Institute for Translational Medicine and Therapeutics (ITMAT). Translational medicine is the concept of going from the preclinical trials (in model organisms, ie. mouse) to clinical trials.

When I arrived at the lab, I was informed by the lab manager, Dropped . Tilo Grosser, that I will be working with nine other high school volunteers. Together, we are trying to answer the question of what is cyclooxyrgenase-2's (COX-2) role in inflammation. All ten of us were divided into teams of two, where each group is learning a lab technique and applying it to the research. This is the general plan for the first three weeks at the lab, but this concept was not completely clear my first week.

The first week consisted of two training days, where a postdoc taught all the volunteers the basic skills for the lab in addition to helping each of us understand all the safety precautions that should be taken with each technique. We ran through PCRs, pipetting, mass spectrometry, and western gels. In addition to the training phase in the lab, there would be daily meetings in the morning to discuss the topic that our groups would be working on for the day. Towards the end of the week, each of the groups of two were assigned to a mentor and every task performed afterward was strictly for the mentor's work. On the last day, I had to help dissect six mice, where three were COX-2 knockout (KO). During the dissection, there was a postdoc, Damion, that was explaining the anatomy and explaining the importance of how evolution is involved in all the adaptations in a mouse. (He is a fanatic about evolution, he gave everyone six phylogenic trees about mice!)

Going into the second week, I knew who my postdoc would be, and I already knew most of the people in the lab. My group's postdoc, Dr. Liz Hennessy, is the postdoc that I have been communicating with during the winter and spring. The part of her work that my group was working on was to determine how mouse macrophages (normal and COX-2 KO) would respond to different treatments (LPS, LDL, and DMSO). Although most of the experiment trials were performed during my second week at the lab, the extraction of the mouse stem cells and the preparation for the experiment occurred during the first week.

My favorite techniques that I have learned to perfect are: immune histology/microscopy, cellular differentiation, and PCR (finally making it work each time). Immune histology is using antibodies to observe proteins within cells under a fluorescent microscope, and the best part of this process is being able to compare the COX-2 KO cells to the control group cells. As for cellular differentiation, I had to make a media that contained the appropriate group of proteins that would initiate the process for the mouse stem cells to differentiate into macrophages. The media consisted of macrophage colony stimulating factor (MCSF), which contained the specific proteins required to properly differentiate in the macrophages.

As for the exploration of the city, I have time after my 9-5 schedule to go with the other volunteers to see their favorite tourist sites and restaurants (most of the volunteers live in the city). I've gone to see the famous Rocky Steps (from the movie) and from there we went to Geno's Cheesesteaks to have the best cheesesteaks in the world. I am looking forward to the weeks to come and to learn other lab techniques .

(There are more pictures below, there is a picture of a mouse dissection, so... WARNING!)









Comments

Popular posts from this blog

Evan Bradley, Week 3 at the Missouri Orthopaedic Institute

As mentioned in my previous blog, I have been awaiting ligament, menisci, and cartilage tissue from a canine or human knee joint for (interleukin) IL-1B tissue culture. IL-1B is an inflammatory cytokine that has been proven to increase rates of tissue degeneration and osteoarthritis development in the Thompson Lab. Dr. Stoker wants me to experiment with different types of knee tissues in a co-culture with varying levels of this cytokine to determine its effects on the entire knee joint. This co-culture uses an insert permeable to the media to separate the two tissue samples from physical contact, while allowing them to share the same media. This creates an extremely accurate model for knee tissues in their native environment due to their exposure to the same synovial fluid in the joint. This model would then be treated with the IL-1B and cultured for 21 days. During these 21 days, the media would be collected every three days for biomarker evaluation at the end of the stu...

Kylie Heering, Week 2 at the Goldstein Lab

We started off our week with a congratulatory acai bowl trip to celebrate Preston’s acceptance into a training grant program. Acai bowls in California top Playa Bowls (no question about it). From what I can tell, its a pretty huge honor to be recognized by this grant, but he’s really humble about it. On Monday, Preston and I decided that testing antibodies that have never been tested on prostate epithelial cells before would be a good objective for my first Western blot on my own. We needed to probe for ASCT2, a glutamine transporter, and GLS in order to determine if their corresponding antibodies are functional. Antibodies are crucial for Western blots because they bind to the protein of interest (POI), allowing for us to qualify its expression after imaging. As such, Preston wanted to make sure they worked by probing for ASCT2 and GLS on three different cell lines. Cell lines are commercially purchased human cells that have been immortalized (modified to grow indefinitely) by telome...

Daniel Cheng, In My Own Room

I had no idea that Pennsylvania is this wide. Within the first hour, my train had reached Philly. But to Pittsburgh, it took another seven. Even before I stepped foot into the Search-Based Planning Lab, I was waylaid by some anxious news. The PhD student assigned to be my mentor, Dhruv, texted me that he, Dr. Likhachev, and most of the lab would be out of town for the entire week. So that was that. Fortunately, it was my first week, the week to be spent learning new material, and Dhruv provided me with plenty to digest. I already had ROS (Robot Operating System) installed, so I looked towards the tutorials that ROS provided. I copied commands into my Linux laptop's terminal to run ROS features. I learned the basic structure of ROS: packages, services and clients, publishers and subscribers, messages, nodes, and topics (which nodes communicate messages over). There was one simple yet interesting program I came across in the tutorials called turtlesim, for which using only 2 comm...